Currently changes in a submodule which is configured with ignore = dirty is shown in Smartgit (7.1.4 #6127, installed: #6097) but not in the command line version of git. Smartgit should respect the ignore = dirty flag and not show these changes.
For instance the following .gitmodules causes the git bash command to ignore any untracked file inside lib/common-libs, but SmartGit still shows the untracked files:
[submodule "lib/common-libs"] path = lib/common-libs url = email@example.com:EMS/common-libs.git ignore = untracked
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