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Support subfolders
Make subfolders or subgroups in interface to group and subgroup repos.

In the Branches window change "Local Branches" to "local".
As a small aesthetic matter I'd suggest "local", over "Local Branches", would have the benefit of being visually consistent with the standard remote names "origin" and "upstream" that are often also displayed in the Branches window.

Conflict Solver: allow to use both side changes
When solving conflicts allow to select from: right, left, right before left, left before right.
This is the only thing I really miss in SmartGit after TortoiseGit.

Add option to automatically add the file name to the commit message
I find it useful to indicate at the start of the commit message which file has been changed, so that commit summaries, such as on the github home page, indicate which file a message refers to.
If a single flie is being committed, it would be useful to have a button or option to insert the file name of the file being committed at the beginning of the message box to save me typing it each time.
For example, my last commit message read:
vertical-text, adjustments after running all tests on latest browser

In log commits view, add a tooltip with branch name when hovering a branch line
This would be very useful, cause when you have much lines it's hard to understand what line stand for what branch.
If hovering is hard to implement, having a legend stating which color refers to which branch would be a good substitute.

Repository aliases to help create logical groups for multiple projects.
When there are multiple projects that share common code repositories, but also have unique component repositories, it would be helpful to create a project Group with an alias (single or multiple) to a shared repository. The logical grouping of the repositories under a given project would simply mass-pulls and status checks, but keep a single cloned instance of any shared repositories.

Windows: Start menu entry for the x64 application
The Windows installer creates a start menu entry for the x86 wrapper application, but not for the x64 one. This is inconvenient when only a 64-bit JRE is installed. Please create entries for both versions.

Reverting commit should show "Revert: <reverted commit message>" like old versions
Current builds show (reverted from commit....) at end of the commit message
i want an option to show that commit is reverted in 1st line as:
Revert: <reverted commit message>
this was present in older builds.... how to reactivate it ?

Column Last Changed On logic
Currently the grid column "Last changed on" simply show the file datestamp from filesystem when it was last changed. I think it would be more logical to show the timestamp for last commit
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